Software & Data

CEWAS: Cascading epigenetic model for genome-wide association studies

• Code and toy data from here here.

AI-TAC:

• Code and toy data from here here.

Brain xQTL web server:

• The brain xQTL web server is available here.

GeneMANIA related code and data:

• MATLAB code for GeneMANIA, including the SW algorithm (from the Bioinformatics 2010 paper) is here.
• MATLAB code for the 3Prop algorithm is here.
• New: R code for the 3Prop algorithm is now available here

Tissue co-expression networks:

• GNAT web tool and code is available here.

Accounting for hidden factors:

• MATLAB code for the HCP paper is available here.