Publications


You can find a full publication list at Google Scholar.


illustration

A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer’s disease

Mostafavi S*, Gaiteri C*, ..., Bennett D*, De Jager P*. Nature Neuroscience.

2018
PubMed
illustration

Integration of genomics and metabolomics for prioritization of rare disease variants: a 2018 literature review

Graham E, ...,Van Karnebeek CBD*, Mostafavi S*. Journal of Inherited Metabolic Disease.

2018
PubMed
illustration

An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome.

Ng B, White C, Klein HU, ..., Mostafavi S*, De Jager P*. Nature Neuroscience.

2017
PubMed
illustration

Allele-specific expression reveals interactions between genetic variation and environment

Knowles D,Davis JR, Edgington H, ..., Mostafavi S, Montgomery SB*, Battle AJ*. Nature Methods.

2017
PubMed
illustration

Network pharmacology of Jak inhibitors

Moodley D, Yoshida H, Mostafavi S, ..., Mathis D, Benoist C. PNAS.

2016
PubMed
illustration

Genetic variants in Alzheimer disease - molecular and brain network approaches

Gaiteri C, Mostafavi S, Honey CJ, De Jager PL, Bennett DA. Nature Review Neurology.

2016
PubMed
illustration

Inhalation of diesel exhaust and allergen alters human bronchial epithelium DNA methylation

Clifford RL, Jones MJ, Maclsaac JL, McEwan LM, Goodman SJ, Mostafavi S, Kobor MS, Carlsten C. Journal of Allergy & Clinical Immunology .

2016
PubMed
illustration

Impact of the X Chromosome and sex on regulatory variation

Kukurba K, Parsana P, ..., Mostafavi S, Battle A*, Montgomery SB*. Genome Research .

2016
PubMed
illustration

Parsing the interferon transcriptional network and its disease associations

Mostafavi S*, Yoshida H*, Moodley D, ..., Mathis D, Benoist C, and the ImmGen Consortium. Cell .

2016
PubMed
illustration

Sharing and Specificity of Co-expression Networks across 35 Human Tissues

Pierson E, the GTEx Consortium, Koller D, Battle A*, Mostafavi S*. PLOS Computational Biology .

2015
PubMed
illustration

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes

Raj T, Rothamel K, Mostafavi S,..., Benoist C*, Stranger BE*, De Jager PL*. Science .

2014
PubMed
illustration

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

Battle A, Mostafavi S, Zhu X,..., Koller D. Genome Research .

2014
PubMed
illustration

Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge

Mostafavi S, Battle A, Zhu X,..., Koller D. PLOS ONE .

2013
PubMed
illustration

Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing

Mostafavi S, Battle A, Zhu X,..., Levinson DF. Molecular Psychiatry.

2013
PubMed
illustration

Using prior biological knowledge when constructing gene regulatory networks

Mostafavi S, and Koller, D. ICML workshop on Machine Learning in Genomics and Genetics .

2012
PDF
illustration

Labeling nodes using three degrees of propagation

Mostafavi S, Goldenberg A, Morris Q. PLOS ONE .

2012
PubMed
illustration

Predicting node characteristics from molecular networks

Mostafavi S, Goldenberg A, Morris Q. Methods in Molecular Biology .

2011
PubMed
illustration

Fast integration of heterogeneous data sources for predicting gene function with limited annotation.

Mostafavi S and Morris Q. Bioinformatics .

2010
PubMed
illustration

Using the Gene Ontology hierarchy when predicting gene function

Mostafavi S and Morris Q. Uncertainty in Artificial Intelligence (UAI) .

2009
PDF
illustration

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

Mostafavi S, Ray D, Warde-Farley D, Grouios C, Morris Q. Genome Biology .

2008
PubMed